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Calculates all sequential candidate groups below max_size.

sequential_groups.Rd

Calculates all sequential candidate groups below max_size.

Usage

sequential_groups(
  samples = NULL,
  susie_alphas = NULL,
  q = 0,
  max_pep = 1,
  max_size = 25,
  prenarrow = TRUE
)

Arguments

samples

(N,p)-shaped matrix of posterior samples where a nonzero value indicates the presence of a signal.

susie_alphas

As an alternative to posterior samples, users may specify an L x p matrix of alphas from a SuSiE object. However, calling susie_groups is recommended instead.

q

The nominal level at which to control the error rate (optional)

max_pep

The maximum posterior error probability (PEP) allowed in a candidate group. Default is 1.

max_size

maximum allowable size for each group.

prenarrow

If true, prenarrows the candidate groups as described in the paper. Defaults to TRUE.