Turns the output of the lattice_peps function into a list of list of candidate groups. Each sub-list corresponds to a list of completely disconnected candidate groups which can be fed to BLiP separately (this saves computation).

Turns the output of the lattice_peps function into a list of list of candidate groups. Each sub-list corresponds to a list of completely disconnected candidate groups which can be fed to BLiP separately (this saves computation).

Usage

lattice_peps_to_cand_groups(
  filtered_peps,
  min_blip_size = 5000,
  verbose = F,
  shape = "square",
  max_pep = 1
)

Arguments

filtered_peps

An output of the lattice_peps function

min_blip_size

Combines connected components so all subproblems are at least this size.

verbose

If true, will give progress reports over time.

shape

One of 'square' or 'circle'.

max_pep

The maximum pep for candidate groups.

Value

A list of list of candidate groups.